Rognan, D.

Fine specificity of antigen binding to two class I major histocompatibility proteins (B*2705 and B*2703) differing in a single amino acid residue.

Starting from the X-ray structure of a class I major histocompatibility complex (MHC)-encoded protein (HLA-B*2705), a naturally presented self-nonapeptide and two synthetic …

Rognan, D.

Structure-Permeation Relations of Met-enkephalin Peptide Analogues on Absorption and Secretion Mechanisms in Caco-2 Monolayers

AbstractDue to the low effective permeabilities of peptides at many absorption sites, their structure-permeation relations are of high interest.

Lang, v. B.

A pseudo-particle approach for studying protein-ligand models truncated to their active sites

A molecular dynamics method has been developed to describe the structural and dynamic properties of protein-ligand complexes that are truncated to their active sites.

Kern, P.

Molecular dynamics and structure-based drug design for predicting non-natural nonapeptide binding to a class I MHC protein

Starting from the known three-dimensional structure of the class I major histocompatibility complex-encoded HLA-B*2705 protein, three non-natural nonapeptides were designed to fit …

Scapozza, L.

Rational design of nonnatural peptides as high-affinity ligands for the HLA-B*2705 human leukocyte antigen

From the three-dimensional structure of the class I major histocompatibility complex (MHC) HLA-B*2705 protein, several nonnatural peptides were designed either to optimize the …

Rognan, D.

MD simulations in Pseudo-Particle Fluids: Applications to active-site Protein Complexes

Truncated protein-ligand active-site complexes were studied by molecular dynamics simulations.

Kern, P.

Molecular Dynamics Simulation of MHC-Peptide Complexes as a Tool for Predicting Potential T Cell Epitopes

The class I major histocompatibility complex-encoded HLA-B*2705 protein was simulated in complex with six different peptides exhibiting unexpected structure-activity relationships.

Rognan, D.

Structure and molecular modeling of GABA-A receptor antagonists.

The recently described potent and selective GABAA antagonist SR 95531 (gabazine) is compared to six other GABAA antagonists: (+)-bicuculline, (-)-securinine, (+)-tubocurarine, …

Rognan, D.

Moleküldynamiksimulation für ein allelspezifisches virales Nonapeptid aus dem Influenza-Matrix-protein in der Bindungstasche eines menschlichen MHC-Klasse-I-Proteins

Nicht α-helical, sondern gestreckt ist die Konformation des antigenen Peptids in der Bindungstasche des menschlichen Haupt-Histokompatibilitätskomplex-(MHC)-Proteins HLA-A2 der …

Zimmermann, N.

Molecular Modeling of the Class I Human Histocompatibility Molecule HLA-A2 Presenting an Allele-Specific Nonapeptide from Influenza Matrix Protein

The conformation is not α-helical, but extended when the antigenic peptide binds in the pocket of the human major histocompatibility complex (MHC) protein HLA-A2 of class I.

Zimmermann, N.