Kellenberger, E.

One class classification for the detection of β2 adrenergic receptor agonists using single-ligand dynamic interaction data.

G protein-coupled receptors are involved in many biological processes, relaying the extracellular signal inside the cell.

Chiesa, L.

Comprehensive analysis of commercial fragment libraries.

Screening of fragment libraries is a valuable approach to the drug discovery process.

Revillo Imbernon, J.

Comparing transmembrane protein structures with ATOLL.

SUMMARY: The 3D structure of transmembrane helices plays a key role in the function of membrane proteins.

Jacquemard, C.

Modeling of CCR5 Recognition by HIV-1 gp120: How the Viral Protein Exploits the Conformational Plasticity of the Coreceptor.

The chemokine receptor CCR5 is a key player in HIV-1 infection.

Jacquemard, C.

Inhibition of the NAD salvage pathway in schistosomes impairs metabolism, reproduction, and parasite survival

NAD, a key co-enzyme required for cell metabolism, is synthesized via two pathways in most organisms.

Schultz, M. D.

Is it time for artificial intelligence to predict the function of natural products based on 2D-structure

Currently, there is no established technique that allows the function of a compound produced by nature to be predicted by looking at its 2-dimensional chemical structure.

Liu, M.

Unsupervised Classification of G-Protein Coupled Receptors and Their Conformational States Using IChem Intramolecular Interaction Patterns

Over the past decade, the ever-growing structural information on G-protein coupled receptors (GPCRs) has revealed the three-dimensional (3D) characteristics of a receptor structure …

Koensgen, F.

Binding mode information improves fragment docking

Docking is commonly used in drug discovery to predict how ligand binds to protein target.

Jacquemard, C.

Local Interaction Density (LID), a Fast and Efficient Tool to Prioritize Docking Poses

Ligand docking at a protein site can be improved by prioritizing poses by similarity to validated binding modes found in the crystal structures of ligand/protein complexes.

Jacquemard, C.

Structural Insights on Fragment Binding Mode Conservation

Aiming at a deep understanding of fragment binding to ligandable targets, we performed a large scale analysis of the Protein Data Bank.

Drwal, M. N.