Publications
(2025). On the Difficulty to Rescore Hits from Ultralarge Docking Screens.. Journal of chemical information and modeling 2025 65 (11), 5553-5566.
(2022). Estimating the Similarity between Protein Pockets.. International journal of molecular sciences 2022 23 (20), -.
(2022). Comparing transmembrane protein structures with ATOLL.. Bioinformatics (Oxford, England) 2022 38 (6), 1743-1744.
(2018). Structure-Based Detection of Orthosteric and Allosteric Pockets at Protein-Protein Interfaces. Methods in Molecular Biology (Clifton, N.J.) 2018 1825 (), 281-294.
(2017). Multi-target Fragments Display Versatile Binding Modes. Molecular Informatics 2017 36 (10), 1700042-.
(2014). Beware of Machine Learning-Based Scoring Functions—On the Danger of Developing Black Boxes. Journal of Chemical Information and Modeling 2014 54 (10), 2807-2815.
(2014). sc-PDB-Frag: A Database of Protein–Ligand Interaction Patterns for Bioisosteric Replacements. Journal of Chemical Information and Modeling 2014 54 (7), 1908-1918.
(2014). Targeting of Smoothened for therapeutic gain.. Trends in pharmacological sciences 2014 35 (5), 237-246.
(2013). Schistosoma mansoni NAD+ catabolizing enzyme: Identification of key residues in catalysis. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2013 1834 (12), 2520-2527.
(2013). Structure du récepteur Smoothened. médecine/sciences 2013 29 (10), 855-860.
(2013). Proteome-scale docking: myth and reality. Drug Discovery Today: Technologies 2013 10 (3), e403-e409.
(2013). Modeling the allosteric modulation of CCR5 function by Maraviroc. Drug Discovery Today: Technologies 2013 10 (2), e297-e305.
(2013). Encoding Protein–Ligand Interaction Patterns in Fingerprints and Graphs. Journal of Chemical Information and Modeling 2013 53 (3), 623-637.
(2012). Structural Insights into the Molecular Basis of the Ligand Promiscuity. Journal of Chemical Information and Modeling 2012 52 (9), 2410-2421.
(2011). Enhancing the Accuracy of Chemogenomic Models with a Three-Dimensional Binding Site Kernel. Journal of Chemical Information and Modeling 2011 51 (7), 1593-1603.
(2011). Flavonoids as inhibitors of human CD38. Bioorganic & Medicinal Chemistry Letters 2011 21 (13), 3939-3942.
(2010). Alignment-Free Ultra-High-Throughput Comparison of Druggable Protein−Ligand Binding Sites. Journal of Chemical Information and Modeling 2010 50 (1), 123-135.
(2010). Structure-Based Approaches to Target Fishing and Ligand Profiling. Molecular Informatics 2010 29 (3), 176-187.
(2008). A simple and fuzzy method to align and compare druggable ligand-binding sites. Proteins: Structure, Function, and Bioinformatics 2008 71 (4), 1755-1778.
(2007). Chemogenomic approaches to rational drug design. British Journal of Pharmacology 2007 152 (1), 38-52.
(2007). Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints. Journal of Chemical Information and Modeling 2007 47 (1), 195-207.
(2006). Assessing the Scaffold Diversity of Screening Libraries. Journal of Chemical Information and Modeling 2006 46 (2), 512-524.
(2006). Development and virtual screening of target libraries. Journal of Physiology-Paris 2006 99 (2), 232-244.
(2004). Comparative evaluation of eight docking tools for docking and virtual screening accuracy. Proteins: Structure, Function, and Bioinformatics 2004 57 (2), 225-242.
(2002). Recovery of known T-cell epitopes by computational scanning of a viral genome.. Journal of computer-aided molecular design 2002 16 (4), 229-243.
(2002). ConsDock: A new program for the consensus analysis of protein–ligand interactions. Proteins: Structure, Function, and Bioinformatics 2002 47 (4), 521-533.
(2001). Dual Function for U2AF35 in AG-Dependent Pre-mRNA Splicing. Molecular and Cellular Biology 2001 21 (22), 7673-7681.
(1998). α-helix mimicry of a β-turn11Edited by J. Wells. Journal of Molecular Biology 1998 281 (2), 235-240.
(1995). MD simulations in Pseudo-Particle Fluids: Applications to active-site Protein Complexes. Quantitative Structure-Activity Relationships 1995 14 (3), 229-241.