Article-Journal

Structural analysis of neomycin B and kanamycin A binding Aminoglycosides Modifying Enzymes (AME) and bacterial ribosomal RNA.

Aminoglycosides are crucial antibiotics facing challenges from bacterial resistance.

Revillo Imbernon, J.
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Benchmarking AlphaFold-Generated Structures of Chemokine-Chemokine Receptor Complexes.

AlphaFold and AlphaFold-Multimer have become two essential tools for the modeling of unknown structures of proteins and protein complexes.

Urvas, L.
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Protein Structure-Based Organic Chemistry-Driven Ligand Design from Ultralarge Chemical Spaces.

Ultralarge chemical spaces describing several billion compounds are revolutionizing hit identification in early drug discovery.

Sindt, F.
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Predicting the duration of action of β2-adrenergic receptor agonists: Ligand and structure-based approaches.

Agonists of the β2 adrenergic receptor (ADRB2) are an important class of medications used for the treatment of respiratory diseases.

Chiesa, L.
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Structural Insights into Molecular Recognition and Receptor Activation in Chemokine-Chemokine Receptor Complexes.

The chemokine system is a key player in the functioning of the immune system and a sought-after target for drug candidates.

Urvas, L.
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Overlap of On-demand Ultra-large Combinatorial Spaces with On-the-shelf Drug-like Libraries.

On-demand combinatorial spaces are shifting paradigms in early drug discovery, by considerably increasing the searchable chemical space to several billions of compounds while …

Perebyinis, M.
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Mining the Protein Data Bank to inspire fragment library design.

The fragment approach has emerged as a method of choice for drug design, as it allows difficult therapeutic targets to be addressed.

Revillo Imbernon, J.
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One class classification for the detection of β2 adrenergic receptor agonists using single-ligand dynamic interaction data.

G protein-coupled receptors are involved in many biological processes, relaying the extracellular signal inside the cell.

Chiesa, L.
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Target-Focused Library Design by Pocket-Applied Computer Vision and Fragment Deep Generative Linking.

We here describe a computational approach (POEM: Pocket Oriented Elaboration of Molecules) to drive the generation of target-focused libraries while taking advantage of all …

Eguida, M.
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Estimating the Similarity between Protein Pockets.

With the exponential increase in publicly available protein structures, the comparison of protein binding sites naturally emerged as a scientific topic to explain observations or …

Eguida, M.
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