Article-Journal

Ranking docking poses by graph matching of protein–ligand interactions: lessons learned from the D3R Grand Challenge 2

A novel docking challenge has been set by the Drug Design Data Resource (D3R) in order to predict the pose and affinity ranking of a set of Farnesoid X receptor (FXR) agonists, …

Da Silva Figueiredo Celestino Gomes, P.

Efficient Inhibition of SmNACE by Coordination Complexes Is Abolished by S. mansoni Sequestration of Metal

SmNACE is a NAD catabolizing enzyme expressed on the outer tegument of S.

Muller-Steffner, H.

The impact of in silico screening in the discovery of novel and safer drug candidates

Drug discovery is a multidisciplinary and multivariate optimization endeavor.

Rognan, D.

Do Fragments and Crystallization Additives Bind Similarly to Drug-like Ligands?

The success of fragment-based drug design (FBDD) hinges upon the optimization of low-molecular-weight compounds (MW < 300 Da) with weak binding affinities to lead compounds with …

Drwal, M. N.

Multi-target Fragments Display Versatile Binding Modes

Promiscuity is an interesting concept in fragment-based drug design as fragments with low specificity can be advantageous for finding many screening hits.

Drwal, M. N.

A step-economical multicomponent synthesis of 3D-shaped aza-diketopiperazines and their drug-like chemical space analysis

A rapid and atom economical multicomponent synthesis of complex aza-diketopiperazines (aza-DKPs) driven by Rh(I)-catalyzed hydroformylation of alkenylsemicarbazides is described.

Regenass, P.

Comparing atom-based with residue-based descriptors in predicting binding site similarity: do backbone atoms matter?

Aim: We question the level of detail required in protein 3D-representation to detect site similarity which is relevant for polypharmacology prediction.

Sturm, N.

Docking pose selection by interaction pattern graph similarity: application to the D3R grand challenge 2015

High affinity ligands for a given target tend to share key molecular interactions with important anchoring amino acids and therefore often present quite conserved interaction …

Slynko, I.

Behavioral and neurochemical characterization of TrkB-dependent mechanisms of agomelatine in glucocorticoid receptor-impaired mice

Growing evidence indicates that impairment of the stress response, in particular the negative feedback regulation mechanism exerted by the hypothalamo–pituitary–adrenal (HPA) axis, …

Boulle, F.

Novel aminotetrazole derivatives as selective STAT3 non-peptide inhibitors

The development of inhibitors blocking STAT3 transcriptional activity is a promising therapeutic approach against cancer and inflammatory diseases.

Pallandre, J.