Virtual Screening

One class classification for the detection of β2 adrenergic receptor agonists using single-ligand dynamic interaction data.

G protein-coupled receptors are involved in many biological processes, relaying the extracellular signal inside the cell.

Chiesa, L.

Estimating the Similarity between Protein Pockets.

With the exponential increase in publicly available protein structures, the comparison of protein binding sites naturally emerged as a scientific topic to explain observations or …

Eguida, M.

IChem: A Versatile Toolkit for Detecting, Comparing, and Predicting Protein–Ligand Interactions

Abstract Structure-based ligand design requires an exact description of the topology of molecular entities under scrutiny.

Da Silva, F.

Structural Searching of Biosynthetic Enzymes to Predict Protein Targets of Natural Products

Recently, we have demonstrated that site comparison methodology using flavonoid biosynthetic enzymes as the query could automatically identify structural features common to …

Sturm, N.

Structure-Based Detection of Orthosteric and Allosteric Pockets at Protein-Protein Interfaces

Protein-protein interfaces represent challenging but very promising targets to discover novel drugs with exquisite specificity profiles.

Da Silva, F.

Structure-Based Discovery of Allosteric Modulators of Two Related Class B G-Protein-Coupled Receptors

Abstract Despite the availability of X-ray crystal structure data for several members of the G-protein-coupled receptor (GPCR) superfamily, structure-based discovery of GPCR …

De Graaf, C.

Molecular modeling of the second extracellular loop of G-protein coupled receptors and its implication on structure-based virtual screening

The current study describes the validation of high-throughput modeling procedures for the construction of the second extracellular loop (ecl2) of all nonolfactory human G …

Graaf, C.

Chemogenomic approaches to rational drug design

Paradigms in drug design and discovery are changing at a significant pace.

Rognan, D.

Development and virtual screening of target libraries

The concomitant development of in silico screening technologies and of three-dimensional information on therapeutically relevant macromolecular targets makes it possible to …

Rognan, D.

Recovering the true targets of specific ligands by virtual screening of the protein data bank

The Protein Data Bank (PDB) has been processed to extract a screening protein library (sc-PDB) of 2148 entries.

Paul, N.